HTGT WGE

Could not display genome browser: DBIx::Class::Storage::DBI::catch {...} (): DBI Connection failed: DBI connect('host=wge-db.internal.sanger.ac.uk;port=5448;dbname=wge','wge_admin',...) failed: connection to server at "wge-db.internal.sanger.ac.uk" (172.17.202.122), port 5448 failed: Connection refused
Is the server running on that host and accepting TCP/IP connections? at /usr/local/lib/perl5/site_perl/5.40.3/DBIx/Class/Storage/DBI.pm line 1639. at /home/www/lib/WGE/bin/../lib/WGE/Util/GenomeBrowser.pm line 181


assembly: species: Show Options and Filters
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Chr

:

Crispr off-target report

Zoom: use "+" and "-" buttons. Move: drag or scroll with the mouse. Select region: hold shift key and drag with the mouse.
Copy crispr: double click the crispr sequence to copy. Help

Spacer Filter

 Variation
Crispr Pair Spacer Length
(-10 to 30 bp)
Min Spacer Length bp
Max Spacer Length bp
 MAF threshold

Enter a decimal number.


Help
Crispr Colour Key:
Off-targets computed
Off-targets not computed
PAM site
Crispr Pair Colour Key:
Left and right off-targets computed
Left and right off-targets not computed
Haplotype Colour Key:
Substitution
Insertion
Deletion
Not on this Haplotype
ChromHMM Colour Key:
State Description Colour
TssA Active TSS
TssFlnk Flanking TSS
TssFlnkU Flanking TSS Upstream
TssFlnkD Flanking TSS Downstream
Tx Strong transcription
TxWk Weak transcription
EnhG1 Genic enhancer1
EnhG2 Genic enhancer2
EnhA1 Active Enhancer 1
EnhA2 Active Enhancer 2
EnhWk Weak Enhancer
ZNF/Rpts ZNF genes & repeats
Het Heterochromatin
TssBiv Bivalent/Poised TSS
EnhBiv Bivalent Enhancer
ReprPC Repressed PolyComb
ReprPCWk Weak Repressed PolyComb
Quies Quiescent/Low
Off-Target Filters

Maximum number of off-targets with:
0 mismatch no max
1 mismatch no max
2 mismatch no max
3 mismatch no max
4 mismatch no max
Help