Browse Crisprs

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Spacer Filter	Variation
Crispr Pair Spacer Length (-10 to 30 bp) Min Spacer Length bp Max Spacer Length bp	MAF threshold Enter a decimal number.

Crispr Colour Key:

Off-targets computed

Off-targets not computed

PAM site

Crispr Pair Colour Key:

Left and right off-targets computed

Left and right off-targets not computed

Haplotype Colour Key:

Substitution

Insertion

Deletion

Not on this Haplotype

ChromHMM Colour Key:

State	Description	Colour
TssA	Active TSS
TssFlnk	Flanking TSS
TssFlnkU	Flanking TSS Upstream
TssFlnkD	Flanking TSS Downstream
Tx	Strong transcription
TxWk	Weak transcription
EnhG1	Genic enhancer1
EnhG2	Genic enhancer2
EnhA1	Active Enhancer 1
EnhA2	Active Enhancer 2
EnhWk	Weak Enhancer
ZNF/Rpts	ZNF genes & repeats
Het	Heterochromatin
TssBiv	Bivalent/Poised TSS
EnhBiv	Bivalent Enhancer
ReprPC	Repressed PolyComb
ReprPCWk	Weak Repressed PolyComb
Quies	Quiescent/Low

Off-Target Filters
Maximum number of off-targets with: 0 mismatch no max Enter 1 or more. There is always 1 perfect match to the crispr itself. 1 mismatch no max 2 mismatch no max 3 mismatch no max 4 mismatch no max Help

Haplotype Filters
Allele Fraction Quality Filter Phasing Inconsistent Homopolymer Unphased Insertion Rescued Molecule High Diversity